PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g00720.1
Common NameLR48_Vigan09g274900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 145aa    MW: 16764.8 Da    PI: 10.2235
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g00720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer32.71.7e-105293357
     ZF-HD_dimer 33 geegtaaalkCaACgCHRnFHRrev 57
                     e ++++++ Ca CgCHRnFHR+++
  Vang03g00720.1  5 AERNSQDSFLCACCGCHRNFHRKHN 29
                    445889*****************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257740.009327IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.9E-7428IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.5E-2064133IPR009057Homeodomain-like
SuperFamilySSF466894.11E-1364131IPR009057Homeodomain-like
PROSITE profilePS500719.10270134IPR001356Homeobox domain
TIGRFAMsTIGR015658.7E-2073128IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MKPNAERNSQ DSFLCACCGC HRNFHRKHNP VQESETENDY LLDVVPFSGT FHPARATDNN  60
NNPEPLQQVR PLRRKRTVFS VEQKNQMRRF ADILGWKPHK GNREEIQRFC TDMGISRKIF  120
VVWLNNNRHR AAQNSSQTSL PSST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517509.17e-89PREDICTED: zinc-finger homeodomain protein 5-like
TrEMBLA0A0S3S1N01e-106A0A0S3S1N0_PHAAN; Uncharacterized protein
TrEMBLA0A0L9VGB31e-106A0A0L9VGB3_PHAAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15282511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-19homeobox protein 22
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]